pilocytic astrocytoma |
Disease ID | 717 |
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Disease | pilocytic astrocytoma |
Definition | A WHO grade I, relatively circumscribed, slowly growing, often cystic astrocytoma occurring in children and young adults. Histologically it is characterized by a biphasic pattern with compacted bipolar cells associated with Rosenthal fibers and multipolar cells associated with microcysts and eosinophilic bodies/hyaline droplets. (WHO) |
Synonym | astrocytoma pilocytic astrocytoma, benign astrocytoma, pilocytic astrocytoma, pilocytic, benign astrocytomas, pilocytic grade i astrocytic neoplasm grade i astrocytic tumor grade i astrocytoma pilocytic astrocytoma (morphologic abnormality) pilocytic astrocytoma -retired- pilocytic astrocytoma [dup] (morphologic abnormality) pilocytic astrocytomas piloid astrocytoma piloid astrocytoma (morphologic abnormality) |
Orphanet | |
DOID | |
UMLS | C0334583 |
Comorbidity | UMLS | Disease | Sentences' Count(Total Sentences:21) C0028945 | oligodendroglioma | 2 C0017636 | glioblastomas | 2 C0025149 | medulloblastoma | 1 C0206734 | hemangioblastoma | 1 C0020255 | hydrocephalus | 1 C0334579 | anaplastic astrocytomas | 1 C0017636 | glioblastoma | 1 C0151740 | increased intracranial pressure | 1 C0003857 | arteriovenous malformation | 1 C0014544 | epilepsy | 1 C0206716 | gangliogliomas | 1 C1266177 | dysembryoplastic neuroepithelial tumor | 1 C0023787 | lipodystrophy | 1 C0004352 | autism | 1 C1266119 | solitary fibrous tumor | 1 C0004114 | astrocytomas | 1 C0025149 | medulloblastomas | 1 C0549423 | obstructive hydrocephalus | 1 C0334579 | anaplastic astrocytoma | 1 C0221032 | generalized lipodystrophy | 1 C1096063 | intractable epilepsy | 1 |
Curated Gene | Entrez_id | Symbol | Resource(Total Genes:7) |
Inferring Gene | Entrez_id | Symbol | Resource(Total Genes:1) |
Text Mined Gene | Entrez_id | Symbol | Score | Resource(Total Genes:79) 10840 | ALDH1L1 | 2.062 | DISEASES 347 | APOD | 2.135 | DISEASES 171023 | ASXL1 | 1.65 | DISEASES 546 | ATRX | 2.73 | DISEASES 605 | BCL7A | 2.426 | DISEASES 54880 | BCOR | 2.162 | DISEASES 682 | BSG | 1.151 | DISEASES 10203 | CALCRL | 1.25 | DISEASES 1029 | CDKN2A | 3.097 | DISEASES 3075 | CFH | 1.418 | DISEASES 1272 | CNTN1 | 1.702 | DISEASES 1291 | COL6A1 | 1.28 | DISEASES 9244 | CRLF1 | 1.012 | DISEASES 9696 | CROCC | 2.97 | DISEASES 10106 | CTDSP2 | 2.18 | DISEASES 9547 | CXCL14 | 1.01 | DISEASES 10540 | DCTN2 | 2.521 | DISEASES 1654 | DDX3X | 1.392 | DISEASES 51428 | DDX41 | 1.16 | DISEASES 1755 | DMBT1 | 1.256 | DISEASES 81704 | DOCK8 | 1.315 | DISEASES 1915 | EEF1A1 | 1.093 | DISEASES 23136 | EPB41L3 | 2.374 | DISEASES 2173 | FABP7 | 1.531 | DISEASES 9715 | FAM131B | 4.875 | DISEASES 2199 | FBLN2 | 1.905 | DISEASES 2260 | FGFR1 | 3.053 | DISEASES 2331 | FMOD | 1.306 | DISEASES 8880 | FUBP1 | 3.889 | DISEASES 2969 | GTF2I | 1.811 | DISEASES 3020 | H3F3A | 4.014 | DISEASES 23462 | HEY1 | 1.088 | DISEASES 23493 | HEY2 | 1.323 | DISEASES 28996 | HIPK2 | 2.501 | DISEASES 3113 | HLA-DPA1 | 1.707 | DISEASES 3326 | HSP90AB1 | 1.323 | DISEASES 3418 | IDH2 | 3.602 | DISEASES 3434 | IFIT1 | 1.416 | DISEASES 57670 | KIAA1549 | 6.564 | DISEASES 3831 | KLC1 | 2.664 | DISEASES 9355 | LHX2 | 2.013 | DISEASES 5609 | MAP2K7 | 2.068 | DISEASES 4147 | MATN2 | 3.264 | DISEASES 4603 | MYBL1 | 1.939 | DISEASES 4763 | NF1 | 5.122 | DISEASES 4771 | NF2 | 2.929 | DISEASES 4774 | NFIA | 1.994 | DISEASES 4781 | NFIB | 1.493 | DISEASES 4782 | NFIC | 2.107 | DISEASES 7101 | NR2E1 | 1.691 | DISEASES 50863 | NTM | 2.35 | DISEASES 116448 | OLIG1 | 1.821 | DISEASES 10215 | OLIG2 | 3.362 | DISEASES 4978 | OPCML | 1.784 | DISEASES 5090 | PBX3 | 1.916 | DISEASES 58473 | PLEKHB1 | 2.19 | DISEASES 5728 | PTEN | 2.692 | DISEASES 5781 | PTPN11 | 2.192 | DISEASES 5787 | PTPRB | 1.764 | DISEASES 9444 | QKI | 2.815 | DISEASES 401409 | RAB19 | 3.571 | DISEASES 117177 | RAB3IP | 2.694 | DISEASES 5906 | RAP1A | 1.209 | DISEASES 146713 | RBFOX3 | 1.158 | DISEASES 6091 | ROBO1 | 1.305 | DISEASES 22904 | SBNO2 | 3.081 | DISEASES 10590 | SCGN | 2.086 | DISEASES 83482 | SCRT1 | 1.395 | DISEASES 6456 | SH3GL2 | 2.185 | DISEASES 4990 | SIX6 | 1.47 | DISEASES 9353 | SLIT2 | 1.317 | DISEASES 6586 | SLIT3 | 1.184 | DISEASES 6663 | SOX10 | 2.543 | DISEASES 55553 | SOX6 | 1.642 | DISEASES 9901 | SRGAP3 | 2.474 | DISEASES 51684 | SUFU | 1.152 | DISEASES 7280 | TUBB2A | 1.881 | DISEASES 7422 | VEGFA | 1.328 | DISEASES 26137 | ZBTB20 | 1.82 | DISEASES |
Locus | Symbol | Locus(Total Locus:7) |
Disease ID | 717 |
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Disease | pilocytic astrocytoma |
Integrated Phenotype | (Waiting for update.) |
Text Mined Phenotype | HPO | Name | Sentences' Count(Total Phenotypes:17) HP:0002664 | Neoplasia | 9 HP:0007115 | Orbital encephalocele | 1 HP:0040184 | Oral hemorrhage | 1 HP:0000238 | Nonsyndromal hydrocephalus | 1 HP:0012721 | Venous malformations | 1 HP:0009733 | Glioma | 1 HP:0100026 | Arteriovenous malformation | 1 HP:0002084 | Bifid skull | 1 HP:0002516 | Intracranial pressure elevation | 1 HP:0009592 | Astrocytoma | 1 HP:0009713 | Spinal hemangioblastoma | 1 HP:0002885 | Medulloblastoma | 1 HP:0010797 | Hemangioblastoma | 1 HP:0100843 | Glioblastoma | 1 HP:0000717 | Autism | 1 HP:0009064 | Generalized lipodystrophy | 1 HP:0009125 | Lipodystrophy | 1 |
Disease ID | 717 |
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Disease | pilocytic astrocytoma |
Manually Symptom | UMLS | Name(Total Manually Symptoms:6) |
Text Mined Symptom | UMLS | Name | Sentences' Count(Total Symptoms:3) |
Manually Genotype(Total Text Mining Genotypes:0) |
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(Waiting for update.) |
Text Mining Genotype(Total Genotypes:0) | |
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(Waiting for update.) |
All Snps(Total Genotypes:20) | |||||||||||||
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snpId | pubmedId | geneId | geneSymbol | diseaseId | sourceId | sentence | score | Year | geneSymbol_dbSNP | CHROMOSOME | POS | REF | ALT |
rs113488022 | 23439714 | 673 | BRAF | umls:C0334583 | BeFree | Activating point mutations of BRAF, such as BRAF (V600E), also lead to pilocytic astrocytoma. | 0.133572094 | 2013 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 23442159 | 673 | BRAF | umls:C0334583 | BeFree | Neither CD34 expression nor BRAF(V600E) status was predictive of prognosis, except for PA tumors where CD34 expression was associated with a shorter overall survival. | 0.133572094 | 2013 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 24532263 | 673 | BRAF | umls:C0334583 | BeFree | This study identified the expression of KIAA1549-BRAF fusion gene and BRAF V600E mutation, mutations at exon 4 of the IDH1 and IDH2 genes in samples of pilocytic astrocytomas (PA) and grade-II astrocytomas (A-II) pediatric patients. | 0.133572094 | 2014 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 24532263 | 3417 | IDH1 | umls:C0334583 | BeFree | This study identified the expression of KIAA1549-BRAF fusion gene and BRAF V600E mutation, mutations at exon 4 of the IDH1 and IDH2 genes in samples of pilocytic astrocytomas (PA) and grade-II astrocytomas (A-II) pediatric patients. | 0.002171535 | 2014 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 23196000 | 1029 | CDKN2A | umls:C0334583 | BeFree | Adult with cerebellar anaplastic pilocytic astrocytoma associated with BRAF V600E mutation and p16 loss. | 0.001900093 | 2013 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 23082883 | 673 | BRAF | umls:C0334583 | BeFree | Different types of aberrations of the BRAF gene in the classic and oligodendroglioma-like component in the recurrent pilocytic astrocytoma suggest that they had different cell origins or that amplification of BRAF was negatively selected under the de novo BRAF V600E mutation. | 0.133572094 | 2013 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 23196000 | 673 | BRAF | umls:C0334583 | BeFree | Adult with cerebellar anaplastic pilocytic astrocytoma associated with BRAF V600E mutation and p16 loss. | 0.133572094 | 2013 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 24057326 | 673 | BRAF | umls:C0334583 | BeFree | A single BRAF V600E mutation was identified in the fusion-negative extracerebellar PA of a very young child who succumbed to the disease. | 0.133572094 | 2013 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 24532263 | 3418 | IDH2 | umls:C0334583 | BeFree | This study identified the expression of KIAA1549-BRAF fusion gene and BRAF V600E mutation, mutations at exon 4 of the IDH1 and IDH2 genes in samples of pilocytic astrocytomas (PA) and grade-II astrocytomas (A-II) pediatric patients. | 0.000542884 | 2014 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 21274720 | 673 | BRAF | umls:C0334583 | BeFree | The high mutation frequencies in pleomorphic xanthoastrocytomas, gangliogliomas and extra-cerebellar pilocytic astrocytomas implicate BRAF (V600E) mutation as a valuable diagnostic marker for these rare tumor entities. | 0.133572094 | 2011 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 24238153 | 673 | BRAF | umls:C0334583 | BeFree | BRAF(V600E) was also seen in five of 11 (45%) non-brainstem GGs and one of eight (13%) brainstem PAs. | 0.133572094 | 2013 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 21884820 | 57670 | KIAA1549 | umls:C0334583 | BeFree | The data further support previous observations that these two alterations of the BRAF, KIAA1549 fusions and V600E point mutations, are associated primarily with pilocytic astrocytomas and nonpilocytic gliomas, respectively. | 0.125700279 | 2011 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 24532263 | 57670 | KIAA1549 | umls:C0334583 | BeFree | This study identified the expression of KIAA1549-BRAF fusion gene and BRAF V600E mutation, mutations at exon 4 of the IDH1 and IDH2 genes in samples of pilocytic astrocytomas (PA) and grade-II astrocytomas (A-II) pediatric patients. | 0.125700279 | 2014 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 23160425 | 673 | BRAF | umls:C0334583 | BeFree | Recent developments in v-raf murine sarcoma viral oncogene homolog B1 (BRAF)(V600E)-specific small molecule inhibitors and their clinical approval for other cancer types could turn BRAF(V600E) into a promising molecular predictor of outcome in pilocytic astrocytomas, given a treatment with a mutation-specific BRAF inhibitor is applied. | 0.133572094 | 2012 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 21190184 | 2048 | EPHB2 | umls:C0334583 | BeFree | For the first time, we report concomitant presence of a somatic BRAF(V600E) mutation in an NF1 patient indicating that more than one Ras/ERK pathway component can be affected in PA. | 0.001085767 | 2011 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 21190184 | 5594 | MAPK1 | umls:C0334583 | BeFree | For the first time, we report concomitant presence of a somatic BRAF(V600E) mutation in an NF1 patient indicating that more than one Ras/ERK pathway component can be affected in PA. | 0.001085767 | 2011 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 21884820 | 673 | BRAF | umls:C0334583 | BeFree | The data further support previous observations that these two alterations of the BRAF, KIAA1549 fusions and V600E point mutations, are associated primarily with pilocytic astrocytomas and nonpilocytic gliomas, respectively. | 0.133572094 | 2011 | BRAF | 7 | 140753336 | A | T,G,C |
rs113488022 | 23442159 | 947 | CD34 | umls:C0334583 | BeFree | Neither CD34 expression nor BRAF(V600E) status was predictive of prognosis, except for PA tumors where CD34 expression was associated with a shorter overall survival. | 0.000271442 | 2013 | BRAF | 7 | 140753336 | A | T,G,C |
rs121913500 | 23934769 | 3417 | IDH1 | umls:C0334583 | BeFree | Our results indicate the usefulness of assessing the R132H IDH1 mutation in glioma patients: the presence or absence of the R132H mutation can help pathologists to distinguish pilocytic astrocytomas (IDH1 WT) from diffuse ones (R132H IDH1/WT). | 0.002171535 | 2014 | IDH1 | 2 | 208248388 | C | T |
rs121913535 | NA | 3845 | KRAS | umls:C0334583 | CLINVAR | NA | 0.240542884 | NA | KRAS | 12 | 25245348 | C | T,G,A |
GWASdb Annotation(Total Genotypes:0) | |
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(Waiting for update.) |
GWASdb Snp Trait(Total Genotypes:0) | |
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(Waiting for update.) |
Mapped by lexical matching(Total Items:0) |
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(Waiting for update.) |
Mapped by homologous gene(Total Items:0) |
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(Waiting for update.) |
Disease ID | 717 |
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Disease | pilocytic astrocytoma |
Case | (Waiting for update.) |